Package: MTPS 1.0.2

MTPS: Multi-Task Prediction using Stacking Algorithms

Simultaneous multiple outcomes prediction based on revised stacking algorithms, which enables the integration of information from predictions of individual models. An implementation of methodologies proposed in our paper: Li Xing, Mary L Lesperance, Xuekui Zhang. (2019) Bioinformatics, "Simultaneous prediction of multiple outcomes using revised stacking algorithms" <doi:10.1093/bioinformatics/btz531>.

Authors:Li Xing [aut, cre], Xiaowen Cao [aut], Yuying Huang [aut], Peijie Xie [ctb], Mary Lesperance [aut], Xuekui Zhang [aut]

MTPS_1.0.2.tar.gz
MTPS_1.0.2.zip(r-4.5)MTPS_1.0.2.zip(r-4.4)MTPS_1.0.2.zip(r-4.3)
MTPS_1.0.2.tgz(r-4.4-any)MTPS_1.0.2.tgz(r-4.3-any)
MTPS_1.0.2.tar.gz(r-4.5-noble)MTPS_1.0.2.tar.gz(r-4.4-noble)
MTPS_1.0.2.tgz(r-4.4-emscripten)MTPS_1.0.2.tgz(r-4.3-emscripten)
MTPS.pdf |MTPS.html
MTPS/json (API)

# Install 'MTPS' in R:
install.packages('MTPS', repos = c('https://ubclxing.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

29 exports 0.36 score 15 dependencies 1 dependents 7 scripts 271 downloads

Last updated 1 years agofrom:8860ad0aed. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 06 2024
R-4.5-winOKSep 06 2024
R-4.5-linuxOKSep 06 2024
R-4.4-winOKSep 06 2024
R-4.4-macOKSep 06 2024
R-4.3-winOKSep 06 2024
R-4.3-macOKSep 06 2024

Exports:AUCcheck.matchcreateFoldscv.glmnet2cv.MTPScv.multiFitglm1glmnet.lassoglmnet.ridgeglmnet1KNN1lda1list.learnerslm1max_finitemin_finitemodify.parameterMTPSmultiFitpredict.cv.multiFitpredict.MTPSpredict.multiFitpredict.rs.multiFitqda1resid.binrpart1rs.multiFitsvm1trapezoid

Dependencies:classcodetoolse1071foreachglmnetiteratorslatticeMASSMatrixproxyRcppRcppEigenrpartshapesurvival

Use the MTPS Package

Rendered fromGuide.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2020-02-06
Started: 2020-02-06

Readme and manuals

Help Manual

Help pageTopics
Area Under CurveAUC
Evaluation using Cross-Validationcv.MTPS
HIV Drug Resistance DatabaseHIV XX YY
Internal Data Objectctn.plot.data mix.plot.data mse.data pred.mix.rs pred.prs.std y.test.bin y.test.mix
List Available Base Learnersglm1 glmnet.lasso glmnet.ridge glmnet1 KNN1 lda1 list.learners lm1 qda1 rpart1 svm1
Modify Default Parameters For Base Learnermodify.parameter
Fit Models using Revised Stacking AlgorithmMTPS
Fit models on multiple outcomesmultiFit
Make predictions from a "MTPS" modelpredict.MTPS
Make predictions for multiple outcomespredict.multiFit